Biological Molecules: MDCAT Notes and MCQs
Classification
Micromolecules (low mol. mass): water, minerals, monosaccharides, amino acids, fatty acids, nucleotides. Macromolecules (polymers): polysaccharides, proteins, nucleic acids; lipids are large but not true polymers. Protoplasm ≈ 70–90% water; proteins are the most abundant organic compound (≈ 10–15%).
Water
- Polar molecule → hydrogen bonds → excellent solvent ("universal solvent").
- High specific heat (1 cal/g/°C) → resists temperature change; high heat of vaporization → cooling by sweating.
- Maximum density at 4 °C; ice floats and insulates aquatic life.
- Cohesion → water columns in xylem; reagent in hydrolysis and photosynthesis; slight ionization into H+ and OH−.
Carbohydrates — Cn(H2O)n
- Monosaccharides: glucose (aldose, C6H12O6), fructose (ketose), galactose; ribose/deoxyribose (pentoses).
- Disaccharides (glycosidic bond): sucrose / cane sugar = glucose + fructose (non-reducing); lactose = glucose + galactose; maltose = glucose + glucose.
- Polysaccharides: starch (amylose α-1,4 unbranched + amylopectin with α-1,6 branches) — plant storage; glycogen — animal starch, highly branched, stored in liver & muscle; cellulose — β-1,4 glucose, unbranched, plant cell wall, most abundant organic compound on earth. Iodine: starch → blue-black, glycogen → red.
Proteins
- Amino acid = central carbon + –NH2 + –COOH + H + R group. 20 common amino acids, joined by peptide bonds (condensation).
- Structure: primary (sequence; Sanger sequenced insulin — 51 amino acids, 2 chains), secondary (α-helix, β-pleated sheet; H-bonds), tertiary (3-D folding; disulphide, ionic, hydrophobic, H-bonds), quaternary (more than one chain, e.g. haemoglobin — 4 chains).
- Fibrous (keratin, collagen) vs globular (enzymes, antibodies, haemoglobin).
Lipids
- Acylglycerols = esters of glycerol (alcohol) + fatty acids. Triglyceride = glycerol + 3 fatty acids (ester bonds). Saturated FA (no C=C) → solid fats; unsaturated → oils.
- Phospholipids: glycerol + 2 fatty acids + phosphate group (+ choline in lecithin). Hydrophilic head, hydrophobic tails → form the cell-membrane bilayer.
- Waxes (long-chain alcohol + fatty acid), steroids (cholesterol, hormones), terpenes.
Nucleic acids
- Nucleotide = pentose sugar + phosphate + nitrogenous base. Purines: A, G. Pyrimidines: C, T (DNA), U (RNA).
- DNA (Watson & Crick, 1953): double helix, two antiparallel strands, sugar-phosphate backbone outside, bases inside. A=T (2 H-bonds), G≡C (3 H-bonds). Diameter 2 nm; one turn = 3.4 nm with 10 base pairs (0.34 nm apart). Based on X-ray data of Rosalind Franklin & Wilkins and Chargaff's rule (A = T, G = C).
- RNA: single-stranded, ribose, uracil. mRNA (≈ 3–4%, carries code), tRNA (≈ 10–15%, cloverleaf, carries amino acids, has anticodon), rRNA (≈ 80%, part of ribosomes).
- Gene: a sequence of nucleotides in DNA that codes for one polypeptide.
Conjugated molecules
Glycolipids (carbohydrate + lipid) and glycoproteins (carbohydrate + protein) on the outer cell surface act in cell recognition, receptors and blood-group antigens. Others: lipoproteins, nucleoproteins.
PMDC learning outcomes for this unit
- Biological molecules: 3.1 Define and classify biological molecules.
- Biological molecules: 3.2 Discuss the importance of biological molecules
- Biological Importance of Water: 3.3 Describe biologically important properties of water (polarity, hydrolysis, specific heat, water as solvent and reagent, density, cohesion/ionization)
- Carbohydrates: 3.4 Discuss carbohydrates: monosaccharides (glucose), oligosaccharides (cane sugar, sucrose, lactose), polysaccharides (starches, cellulose, glycogen)
- Proteins: 3.5 Describe proteins: amino acids, structure of proteins
- Lipids: 3.6 Describe lipids: phospholipids, triglycerides, alcohol and esters (acylglycerol)
- Ribonucleic acid (RNA): 3.7 Give an account of structure and function of RNA
- Conjugated molecules: 3.8 Discuss conjugated molecules (glycolipids, glycoproteins)
- Structure of DNA: 3.9 Explain the double helical structure of DNA as proposed by Watson and Crick.
- Structure of DNA: 3.10 Define gene as a sequence of nucleotides as part of DNA, which codes for the formation of a polypeptide.